Package: CliquePercolation 0.4.0

CliquePercolation: Clique Percolation for Networks

Clique percolation community detection for weighted and unweighted networks as well as threshold and plotting functions. For more information see Farkas et al. (2007) <doi:10.1088/1367-2630/9/6/180> and Palla et al. (2005) <doi:10.1038/nature03607>.

Authors:Jens Lange [aut, cre], Janis Zickfeld [ctb], Alexander P. Christensen [ctb], Pedro Henrique Ribeiro Santiago [ctb]

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CliquePercolation.pdf |CliquePercolation.html✨
CliquePercolation/json (API)
NEWS

# Install 'CliquePercolation' in R:

install.packages('CliquePercolation', repos = c('https://langejens.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/langejens/cliquepercolation/issues

Datasets:

Obama - Data: Evaluative Reactions Toward Barack Obama
immuno - Data: Immunoglobulin interaction network

On CRAN:

4.78 score 4 stars 10 scripts 305 downloads 1 mentions 8 exports 116 dependencies

Last updated 11 months agofrom:61076894b8. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 04 2024
R-4.5-win	OK	Nov 04 2024
R-4.5-linux	OK	Nov 04 2024
R-4.4-win	OK	Nov 04 2024
R-4.4-mac	OK	Nov 04 2024
R-4.3-win	OK	Nov 04 2024
R-4.3-mac	OK	Nov 04 2024

Exports:cpAlgorithm cpColoredGraph cpCommunityGraph cpCommunitySizeDistribution cpPermuteEntropy cpThreshold FuzzyMod SignedFuzzyMod

Dependencies:abind backports base64enc bslib cachem checkmate cli cluster colorspace commonmark corpcor cpp11 crayon data.table deldir DEoptimR digest dplyr ellipse evaluate fansi farver fastmap fdrtool fontawesome foreign Formula fs generics ggplot2 glasso glue GPArotation gridExtra gtable gtools highr Hmisc htmlTable htmltools htmlwidgets httpuv igraph interp isoband jpeg jquerylib jsonlite knitr labeling later lattice latticeExtra lavaan leaps lessR lifecycle magrittr MASS Matrix maxLik memoise mgcv mime miscTools mnormt munsell nlme nnet numDeriv ohenery openxlsx pbapply pbivnorm pillar pkgconfig plyr png Polychrome promises psych qgraph quadprog R6 rappdirs RColorBrewer Rcpp RcppEigen reshape2 rlang rmarkdown robustbase rpart rstudioapi sandwich sass scales scatterplot3d shiny sourcetools stringi stringr tibble tidyselect tinytex utf8 vctrs viridis viridisLite withr xfun xtable xts yaml zip zoo

CliquePercolation

Jens Lange

Rendered fromCliquePercolation.Rmdusingknitr::rmarkdownon Nov 04 2024.

Last update: 2022-11-08
Started: 2019-10-31

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Clique Percolation Community Detection	cpAlgorithm
Colored Network According To Clique Percolation Communities	cpColoredGraph
Plotting Clique Percolation Community Network	cpCommunityGraph
Plotting Clique Percolation Community Size Distribution	cpCommunitySizeDistribution
Confidence Intervals Of Entropy Based On Random Permutations Of Network	cpPermuteEntropy
Optimizing 'k' And 'I' For Clique Percolation Community Detection	cpThreshold
Fuzzy Modularity of a community structure of a graph	FuzzyMod
Data: Immunoglobulin interaction network	immuno
Data: Evaluative Reactions Toward Barack Obama (2012)	Obama
print.cpAlgorithm	print.cpAlgorithm
print.cpPermuteEntropy	print.cpPermuteEntropy
Signed Fuzzy Modularity of a community structure of a graph	SignedFuzzyMod
summary.cpAlgorithm	summary.cpAlgorithm